Package: GrowthCurveME 0.1.0.9000
GrowthCurveME: Mixed-Effects Modeling for Growth Data
Simple and user-friendly wrappers to the 'saemix' package for performing linear and non-linear mixed-effects regression modeling for growth data to account for clustering or longitudinal analysis via repeated measurements. The package allows users to fit a variety of growth models, including linear, exponential, logistic, and 'Gompertz' functions. For non-linear models, starting values are automatically calculated using initial least-squares estimates. The package includes functions for summarizing models, visualizing data and results, calculating doubling time and other key statistics, and generating model diagnostic plots and residual summary statistics. It also provides functions for generating publication-ready summary tables for reports. Additionally, users can fit linear and non-linear least-squares regression models if clustering is not applicable. The mixed-effects modeling methods in this package are based on Comets, Lavenu, and Lavielle (2017) <doi:10.18637/jss.v080.i03> as implemented in the 'saemix' package. Please contact us at [email protected] with any questions.
Authors:
GrowthCurveME_0.1.0.9000.tar.gz
GrowthCurveME_0.1.0.9000.zip(r-4.5)GrowthCurveME_0.1.0.9000.zip(r-4.4)GrowthCurveME_0.1.0.9000.zip(r-4.3)
GrowthCurveME_0.1.0.9000.tgz(r-4.4-any)GrowthCurveME_0.1.0.9000.tgz(r-4.3-any)
GrowthCurveME_0.1.0.9000.tar.gz(r-4.5-noble)GrowthCurveME_0.1.0.9000.tar.gz(r-4.4-noble)
GrowthCurveME_0.1.0.9000.tgz(r-4.4-emscripten)GrowthCurveME_0.1.0.9000.tgz(r-4.3-emscripten)
GrowthCurveME.pdf |GrowthCurveME.html✨
GrowthCurveME/json (API)
NEWS
# Install 'GrowthCurveME' in R: |
install.packages('GrowthCurveME', repos = c('https://cancermodels-org.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/cancermodels-org/growthcurveme/issues
- exp_mixed_data - Sample exponential growth dataset
- gomp_mixed_data - Sample Gompertz growth dataset
- lin_mixed_data - Sample linear growth dataset
- log_mixed_data - Sample logistic growth dataset
Last updated 7 days agofrom:803ee53a47. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 20 2024 |
R-4.5-win | OK | Dec 20 2024 |
R-4.5-linux | OK | Dec 20 2024 |
R-4.4-win | OK | Dec 20 2024 |
R-4.4-mac | OK | Dec 20 2024 |
R-4.3-win | OK | Dec 20 2024 |
R-4.3-mac | OK | Dec 20 2024 |
Exports:exponential_mixed_modelgompertz_mixed_modelgrowth_curve_model_fitgrowth_model_residual_plotsgrowth_model_summary_tablegrowth_vs_time_plotlinear_mixed_modellogistic_mixed_modelsummarize_growth_modelsummarize_growth_model_lssummarize_growth_model_mixed
Dependencies:askpassbase64encbslibcachemclicolorspacecpp11data.tabledigestdplyrevaluatefansifarverfastmapflextablefontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsggplot2gluegridExtragtablehighrhtmltoolsinvestrisobandjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrMASSMatrixmclustmemoisemgcvmimeminpack.lmmomentsmunsellnlmenpdeofficeropensslpatchworkpillarpkgconfigpurrrR6raggrappdirsRColorBrewerRcpprlangrmarkdownsaemixsassscalesstringistringrsyssystemfontstextshapingtibbletidyrtidyselecttinytexutf8uuidvctrsviridisviridisLitewithrxfunxml2yamlzip
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Sample exponential growth dataset | exp_mixed_data |
Fit an exponential mixed-effects regression model | exponential_mixed_model |
Sample Gompertz growth dataset | gomp_mixed_data |
Fit a Gompertz mixed-effects regression model | gompertz_mixed_model |
Fit a growth function using mixed-effects regression modeling | growth_curve_model_fit |
Create residual diagnostic plots for growth model | growth_model_residual_plots |
Create a printable table of the summarized growth model result reporting | growth_model_summary_table |
Generate growth vs time plots | growth_vs_time_plot |
Sample linear growth dataset | lin_mixed_data |
Fit a linear mixed-effects regression model | linear_mixed_model |
Sample logistic growth dataset | log_mixed_data |
Fit a logistic mixed-effects regression model | logistic_mixed_model |
Summarize growth model object and data | summarize_growth_model |
Summarize least-squares growth model object and data | summarize_growth_model_ls |
Summarize mixed-effects growth model object and data | summarize_growth_model_mixed |